CDS

Accession Number TCMCG007C15990
gbkey CDS
Protein Id XP_009130133.1
Location complement(join(29607154..29607294,29607469..29607543,29607661..29607694,29607816..29607916,29608011..29608097,29608181..29608273,29608440..29608520,29608620..29608833,29609371..29609630,29610979..29611524))
Gene LOC103854915
GeneID 103854915
Organism Brassica rapa

Protein

Length 543aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA249065
db_source XM_009131885.2
Definition methylthioalkylmalate synthase 1, chloroplastic isoform X2 [Brassica rapa]

EGGNOG-MAPPER Annotation

COG_category E
Description Belongs to the alpha-IPM synthase homocitrate synthase family
KEGG_TC -
KEGG_Module -
KEGG_Reaction R08619        [VIEW IN KEGG]
R08623        [VIEW IN KEGG]
KEGG_rclass RC00004        [VIEW IN KEGG]
RC00067        [VIEW IN KEGG]
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
KEGG_ko ko:K15741        [VIEW IN KEGG]
EC 2.3.3.17        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko00966        [VIEW IN KEGG]
ko01110        [VIEW IN KEGG]
ko01210        [VIEW IN KEGG]
map00966        [VIEW IN KEGG]
map01110        [VIEW IN KEGG]
map01210        [VIEW IN KEGG]
GOs GO:0001101        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006082        [VIEW IN EMBL-EBI]
GO:0006790        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009414        [VIEW IN EMBL-EBI]
GO:0009415        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009625        [VIEW IN EMBL-EBI]
GO:0009628        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010035        [VIEW IN EMBL-EBI]
GO:0010177        [VIEW IN EMBL-EBI]
GO:0016143        [VIEW IN EMBL-EBI]
GO:0016144        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016746        [VIEW IN EMBL-EBI]
GO:0019748        [VIEW IN EMBL-EBI]
GO:0019757        [VIEW IN EMBL-EBI]
GO:0019758        [VIEW IN EMBL-EBI]
GO:0019760        [VIEW IN EMBL-EBI]
GO:0019761        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043436        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044272        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044550        [VIEW IN EMBL-EBI]
GO:0046912        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:1901135        [VIEW IN EMBL-EBI]
GO:1901137        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]
GO:1901566        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901657        [VIEW IN EMBL-EBI]
GO:1901659        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAATTTTATTGTGCATGTTCTCCATCTCATTGCAAAACAATTTGCTCACTATCTTTTATCCTCCAAACCAATCAAAATATTTATTTCTCTCCTACGTACGTACTTCATAGTTATGGCATCGTCACTTCTGACATCTTCCGGAATTATCCCTACCACCGGTTCGAACATGGTTGTCCGGTCATTCTTACCCTTTGGATCTGTCCGCCTGACCCGTCCGTACAACAACTCGTCCTTGCTCATCTCATGTTGTTCCTCTGTGTCCAAAAACGCCGAGACTAGTGGTACTGACCTCAAAACTATCGTGGAACGGTGGCCGGAGTACATTCCGAACAAGCTCCCAGACAAGAACTATGTGCGTGTATTCGACACGACGCTCCGTGACGGCGAACAATCTCCCGGTGCAGCCCTTACTCCACCGCAGAAGATAGAGATTGCCCGGCAGCTCGCTAAACTCAGAGTAGACATCATGGAAGTTGGTTTTCCCGTGTCATCAGAGGAAGAGTTCGAAACCATCCAAACCATCGCCAAAACCGTGGGAAACGAGGTTGATGAGGAAACAGGTTATATCCCAGTGATATGCGTCATCGCACGAAGCAAAGAAAGAGATATAAAGGCGGCTTGGGAGTCAGTGAAGTACGCAAAGAGGCCGAGGATAGTCATATTCACTTCTACTAGTGACATTCACTTGAAATATAAGTTGAAAATGACTAGAGAAGAAGTCGTCGACATGGTCGCGAGTAGCATTAGGTTTGCTAAAAGTTTAGGCTTCGAAGACATCGAGTTTGGTTGCGAAGATGGCGGCAGGTCTGACAAGGATTATATATGCACGGTTTTTGAAGAAGCGATCAAAGCGGGTGCAACCACCCTGGCCTGCCCGGACACGGTGGGGATCAACATGCCGCACGAATACGGGAAACTTGTGAGATACATCAAAGCAAACACTCCTGGAATTGATGATGTTATCTTCAGCGCTCATTGTCACAATGACCTTGGTGTTGCTACCGCCAACACAATCGCCGGTATATGTGCGGGAGCACGACAAGTCGAAGTAACAATCAATGGAATAGGTGAAAGAAGTGGGAATGCACCGCTTGAAGAGGTCGTGATGGCTTTGAAATGTCGAGGAGCATTTGTGATGGGTGGTGTTTACACAAGAATAGACACACGCCAAATTATGGCTACCAGCAAGATGGTTCAAGAATATACTGGCTTGTATGTTCAGCCACATAAACCTATAGTTGGAGCCAACTGTTTTGTTCATGAGAGCGGCATTCACCAGGATGGGATATTGAAAAATCGGAGTACATATGAGATCATATCACCAGAAGATGTTGGAGTTGTAAAATCTCAAAATTCAGGCATTGTTCTTGGAAAGCTTAGTGGACGTCATGCAGTTAAAGGTCGTCTGAAAGAGTTGGGATATGAAATCAGTGATGAGAAATTGAACGAGGTTTTCTCACGGTTCAGAGATTTAACCAAGCAGAAAAAGAGAGTCACAGATGATGATCTGAAGGCATTAGTAACGTGTGGTGATGAAATCTTCTCCTCAGATAAATTAAACGGCACTGACGACAACGAAATCAACAGTAACGGCTATGTACCGGCTCCTCAGATTTCGTCTGTGGTATGA
Protein:  
MNFIVHVLHLIAKQFAHYLLSSKPIKIFISLLRTYFIVMASSLLTSSGIIPTTGSNMVVRSFLPFGSVRLTRPYNNSSLLISCCSSVSKNAETSGTDLKTIVERWPEYIPNKLPDKNYVRVFDTTLRDGEQSPGAALTPPQKIEIARQLAKLRVDIMEVGFPVSSEEEFETIQTIAKTVGNEVDEETGYIPVICVIARSKERDIKAAWESVKYAKRPRIVIFTSTSDIHLKYKLKMTREEVVDMVASSIRFAKSLGFEDIEFGCEDGGRSDKDYICTVFEEAIKAGATTLACPDTVGINMPHEYGKLVRYIKANTPGIDDVIFSAHCHNDLGVATANTIAGICAGARQVEVTINGIGERSGNAPLEEVVMALKCRGAFVMGGVYTRIDTRQIMATSKMVQEYTGLYVQPHKPIVGANCFVHESGIHQDGILKNRSTYEIISPEDVGVVKSQNSGIVLGKLSGRHAVKGRLKELGYEISDEKLNEVFSRFRDLTKQKKRVTDDDLKALVTCGDEIFSSDKLNGTDDNEINSNGYVPAPQISSVV